Job Description Summary: |
Founded in 1824, the GW School of Medicine and Health Sciences (
SMHS) is the 11th oldest medical school in the country and the first in the nation's capital. Since its establishment, the school has been at the forefront of medical education, and has grown to include highly-ranked programs in the health and biomedical sciences. With dozens of top-tier residency programs,
SMHS is a competitive and esteemed destination for medical school graduates and biomedical researchers across the country. Mazumder Lab located at the Washington DC Foggy Bottom campus is involved in the development of knowledge bases (e.g. GlyGen,
ARGOS, Biomarker-Partnership) and bioinformatics software (
HIVE, PredictMod). Find out more here:
http://smhs.gwu.edu/ and
https://hivelab.biochemistry.gwu.edu/
The
Bioinformatics Specialist I will work under the direct supervision of Dr. Raja Mazumder at The George Washington University (Washington DC,
USA) and will be involved in the development of knowledge bases and bioinformatics tools. Employees are in charge of the research and development process. Investigative research, research design, and experimentation are all part of the job. Employees in this subfield undertake data investigation, interpretation, and analysis for research initiatives. They will be significantly contributing to the deliverables and development of data analysis tools and web resources. Task includes mining research data, establishing data specifications, writing data integration scripts, building data models, and managing and updating datasets. Bioinformatics is a branch of biology and computer science concerned with the collection, storage, analysis, and transmission of biological data, such as nucleotides, proteins, glycans, and other biomolecules. Responsibilities include:
* Developing backend, managing, and maintaining data and processed datasets, and testing
API-driven workflows.
* Assisting in the testing and development of portals, software, tools, and workflows produced in the lab.
* Assisting in the maintenance and update of portals and knowledge-bases.
* Assisting in the submission of datasets to collaborators and sponsors.
* Biocuration of glycans, proteins, genes, and omics data.
* Writing specification documentation for research projects, generating frontend mockups, and creating web interfaces.
* Using GitHub, Slack, and similar tools for communication..
* Maintaining documents and meeting notes. Creating, presenting, and discussing various progress reports with project stakeholders.
* Scheduling tasks and following up on the progress with stakeholders.
* Coordinating meetings and assisting in drafting research reports, proposals, publications, and presentation content. The research reports will contain statements covering tasks performed and research findings, including: a clear account of the work performed under each task during the reporting period; an outline of the work to be accomplished during the next report period; a description of any problems encountered or anticipated that will affect the completion of any work within the constraints set, together with recommended solutions to such problems.
This position performs other duties as assigned. The omission of specific duties does not preclude the supervisor from assigning duties that are logically related to the position. |
Preferred Qualifications: |
* Expert in genomic data analysis and biocuration.
* Familiarity with biological databases.
* Knowledge in programming/scripting, database management, and software development (Python, MongoDB).
* Familiarity with web frameworks and front-end development (
HTML/
CSS/JavaScript).
* Familiarity with bioinformatics platforms/tools and biomedical data modeling.
* Familiarity with developing
API web services and backend development.
* Familiarity with database structures and data dictionaries. |